Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2875FIG00444893 hypothetical protein. (257 aa)    
Predicted Functional Partners:
BF49_1922
Cytochrome c oxidase subunit CcoP EC 1931; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
  0.630
BF49_1925
Cytochrome c oxidase subunit CcoN EC 1931; Belongs to the heme-copper respiratory oxidase family.
 
  
  0.575
BF49_1924
Cytochrome c oxidase subunit CcoO EC 1931.
 
  
  0.572
BF49_0271
FIG006231 RNAbinding protein.
    
  0.511
BF49_2307
Ubiquinolcytochrome C reductase ironsulfur subunit EC 11022; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
     
  0.503
BF49_5266
Cytochrome c oxidase polypeptide III EC 1931.
    
  0.430
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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