Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2894Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
BF49_2893
Thioredoxin reductase EC 1819.
     
 0.857
BF49_4862
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.644
BF49_2892
Transcriptional regulator BkdR of isoleucine and valine catabolism operon.
  
    0.489
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 
 0.412
BF49_1771
Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.411
BF49_4324
LysRfamily transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.406
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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