Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2935FIG00443663 hypothetical protein. (208 aa)    
Predicted Functional Partners:
BF49_2934
Hypothetical protein.
 
    
0.760
aroE
Shikimate 5dehydrogenase I alpha EC 11125; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.624
BF49_6128
FIG00441633 hypothetical protein.
  
     0.551
BF49_0361
FIG00440135 hypothetical protein.
  
     0.541
BF49_0994
FIG00440764 hypothetical protein.
  
     0.527
BF49_1680
Putative transmembrane antisigma factor.
  
     0.520
BF49_0381
FIG00886901 hypothetical protein.
  
     0.514
BF49_1936
ABC transporter HlyBMsbA family.
  
     0.514
BF49_1297
FIG00440554 hypothetical protein.
 
     0.510
BF49_5187
Bll6480 protein.
  
     0.506
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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