Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2938Mlr4574 protein. (90 aa)    
Predicted Functional Partners:
BF49_6264
Hypothetical protein.
  
 
 0.805
BF49_5736
Cystathionine gammasynthase EC 25148.
  
 
 0.669
BF49_7070
Cystathionine betalyase EC 4418.
  
 
 0.669
BF49_2937
Sulfate permease.
       0.615
aroE
Shikimate 5dehydrogenase I alpha EC 11125; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.597
guaA
GMP synthase glutaminehydrolyzing EC 6352; Catalyzes the synthesis of GMP from XMP.
    
 0.560
ahcY
Adenosylhomocysteinase EC 3311; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
    
 0.473
BF49_3848
Outer membrane protein.
    
 0.438
BF49_6628
Mll5186 protein.
    
 0.438
BF49_2729
FIG111991 hypothetical protein.
  
     0.436
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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