Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2956FIG00443316 hypothetical protein. (259 aa)    
Predicted Functional Partners:
BF49_2955
FIG00442365 hypothetical protein.
       0.786
BF49_2009
Hypothetical protein.
  
     0.630
BF49_2016
Hypothetical protein.
  
     0.630
BF49_2954
Lignin betaether hydrolase.
 
     0.576
BF49_1916
Hypothetical membrane associated protein.
  
 
   0.561
BF49_1975
Carboxymuconolactone decarboxylase.
  
     0.541
BF49_2957
Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family.
 
     0.535
BF49_3241
Ectoine hydroxylase EC 117.
  
     0.511
BF49_1384
Blr3364 hypothetical protein.
  
     0.503
BF49_2220
Putative reductase.
 
     0.501
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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