Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2994HTHtype transcriptional regulator PetP. (154 aa)    
Predicted Functional Partners:
BF49_2995
DNAbinding response regulator PetR.
     
 0.857
BF49_2996
Osmolarity sensor protein EnvZ EC 273.
  
  
 0.824
BF49_5181
Lproline glycine betaine binding ABC transporter protein ProX TC 3A1121 Osmotic adaptation.
  
  
 0.507
BF49_6803
FIG020313 hypothetical protein.
  
     0.447
BF49_3009
Molybdenum cofactor biosynthesis protein MoaD.
  
     0.445
BF49_6799
ATPDEPENDENT PROTEASE SUBUNIT.
  
     0.427
fur-3
Zinc uptake regulation protein ZUR; Belongs to the Fur family.
   
  
 0.422
BF49_7023
Nitrogen regulation protein NtrB EC 27133.
  
     0.418
BF49_5153
FIG00441651 hypothetical protein.
  
     0.412
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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