Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3013Inner membrane protein YihY formerly thought to be RNase BN. (374 aa)    
Predicted Functional Partners:
BF49_3012
FIG00440859 hypothetical protein.
       0.779
BF49_3011
ProteinN5glutamine methyltransferase PrmB methylates LSU ribosomal protein L3p; Belongs to the protein N5-glutamine methyltransferase family.
     
 0.559
BF49_3010
Molybdenum cofactor biosynthesis protein MoaE.
       0.553
BF49_3008
CDPdiacylglycerolglycerol3phosphate 3phosphatidyltransferase EC 2785; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.551
BF49_3009
Molybdenum cofactor biosynthesis protein MoaD.
       0.539
BF49_0332
Pyridoxamine 5phosphate oxidase EC 1435.
 
    0.473
BF49_2063
Calciumproton exchanger.
  
    0.419
BF49_4409
Calciumproton antiporter.
  
    0.419
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.403
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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