Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_3028tRNA pseudouridine synthase A EC 42170; Belongs to the pseudouridine synthase RsuA family. (727 aa)    
Predicted Functional Partners:
der
GTPbinding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.920
cmk
Cytidylate kinase EC 27425.
 
  
 0.902
BF49_3027
16S rRNA guanine966N2methyltransferase EC 211171.
 
     0.875
BF49_6789
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.830
BF49_0229
Exodeoxyribonuclease III EC 31112.
  
    0.800
BF49_1000
Exodeoxyribonuclease III EC 31112.
  
    0.800
BF49_6779
Exodeoxyribonuclease III EC 31112.
  
    0.800
rplU
LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
 
   0.768
BF49_2843
Ribosomal large subunit pseudouridine synthase D EC 42170; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
 0.731
BF49_6267
Ribosomal large subunit pseudouridine synthase C EC 42170; Belongs to the pseudouridine synthase RluA family.
 
 0.724
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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