STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3045Lipid IVA 3deoxyDmannooctulosonic acid transferase EC 249912 often with EC 249913 also; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (438 aa)    
Predicted Functional Partners:
lpxK
Tetraacyldisaccharide 4kinase EC 271130; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
 0.999
BF49_3046
Protein of unknown function DUF374.
     0.988
kdsB
3deoxymannooctulosonate cytidylyltransferase EC 27738; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
 
  
 0.985
BF49_1242
Lipid A biosynthesis lauroyl acyltransferase EC 231.
 
  
 0.982
BF49_5717
ADPheptoselipooligosaccharide heptosyltransferase II EC 241.
 
  
 0.959
BF49_5720
FIG00442610 hypothetical protein.
    
 0.923
BF49_5037
FIG00442610 hypothetical protein.
    
 0.910
BF49_6713
AcylacylcarrierproteinUDPN acetylglucosamine Oacyltransferase EC 231129; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
   
 0.903
BF49_3174
Polysialic acid capsule sugar isomerase KpsFGutQ family; Belongs to the SIS family. GutQ/KpsF subfamily.
 
   
 0.874
lpxB
LipidAdisaccharide synthase EC 241182; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
   
 0.862
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.