Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3068FIG00440682 hypothetical protein. (132 aa)    
Predicted Functional Partners:
BF49_6323
Macrolide export ATPbindingpermease protein MacB EC 363.
    
   0.651
BF49_3069
Llactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
       0.502
BF49_4801
Flagellar biosynthesis protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.478
BF49_5817
Flagellar biosynthesis protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.478
BF49_1658
Type I secretion outer membrane protein TolC precursor.
    
   0.453
BF49_2718
Cobaltzinccadmium resistance protein CzcA Cation efflux system protein CusA.
    
   0.453
BF49_4578
Heavy metal RND efflux outer membrane protein CzcC family.
    
   0.453
BF49_4956
Flagellar hooklength control protein FliK.
    
   0.453
BF49_6626
Heavy metal RND efflux outer membrane protein CzcC family.
    
   0.453
BF49_7038
Type I secretion outer membrane protein TolC precursor.
    
   0.453
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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