Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3082FIG00741453 hypothetical protein. (212 aa)    
Predicted Functional Partners:
BF49_1165
Adenylate cyclase EC 4611.
   
 
 0.723
BF49_3165
Adenylate cyclase EC 4611.
   
 
 0.723
BF49_2916
Adenylate cyclase EC 4611.
   
 
 0.716
BF49_4047
Adenylate cyclase EC 4611.
   
 
 0.716
BF49_2332
FIG003603 membrane protein putative.
  
     0.641
rpmJ
LSU ribosomal protein L36p; Belongs to the bacterial ribosomal protein bL36 family.
       0.608
BF49_1617
FIG00442207 hypothetical protein.
  
     0.596
BF49_3271
Methylaccepting chemotaxis protein.
  
     0.582
BF49_2277
Glycosyl transferase group 2 family protein.
 
   
 0.579
BF49_3272
Methylaccepting chemotaxis protein.
  
     0.562
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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