STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3088tRNA proofreading protein STM4549. (155 aa)    
Predicted Functional Partners:
BF49_3089
Adenylate cyclase EC 4611.
       0.714
BF49_3087
Haloacid dehalogenase type II EC 3812.
       0.648
BF49_3086
Alcohol dehydrogenase EC 1111.
  
    0.454
BF49_4507
Flagellar basalbody rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.407
fliE
Flagellar hookbasal body complex protein FliE.
    
   0.407
BF49_4821
Flagellar basalbody rod modification protein FlgD.
    
   0.407
fliE-2
Flagellar hookbasal body complex protein FliE.
    
   0.407
purN
Phosphoribosylglycinamide formyltransferase EC 2122; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.404
BF49_0998
Alanine racemase EC 5111; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
   
    0.401
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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