Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3101EXOPOLYSACCHARIDE PRODUCTION PROTEIN EXOQ. (333 aa)    
Predicted Functional Partners:
BF49_3100
EXOPOLYSACCHARIDE PRODUCTION PROTEIN EXOQ.
      0.888
BF49_3104
UDPhexose transferase.
 
  
 0.813
BF49_2681
FIG00450136 hypothetical protein.
 
     0.776
BF49_3099
Hypothetical protein.
 
   
 0.765
BF49_2679
Polysaccharide biosynthesis protein.
 
  
 0.755
BF49_5646
Hypothetical protein.
 
  
 0.754
BF49_0472
Hypothetical protein.
 
   
 0.731
BF49_4134
Blr7855 hypothetical protein.
  
     0.712
BF49_6587
Probable glycosyl transferase.
  
  
 0.701
BF49_3102
Bll7572 unknown protein.
  
  
 0.696
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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