Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_3110Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors. (1371 aa)    
Predicted Functional Partners:
BF49_1446
Sensory box histidine kinaseresponse regulator.
 
  
 0.944
BF49_2142
Twocomponent hybrid sensor and regulator.
  
 
 0.931
BF49_0769
Twocomponent hybrid sensor and regulator.
  
 
 0.922
BF49_7296
Probable twocomponent response regulator.
 
 
0.917
BF49_7235
Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors.
 
  
0.891
BF49_5131
Response regulator.
 
 
 0.884
BF49_4279
Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors.
 
 
0.865
BF49_4423
Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors.
 
 
0.860
BF49_7234
Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors.
 
 
0.860
BF49_7295
FIG00439681 hypothetical protein.
 
 
0.860
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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