STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3111Malate dehydrogenase EC 11137; Belongs to the LDH2/MDH2 oxidoreductase family. (350 aa)    
Predicted Functional Partners:
BF49_5845
Fumarate hydratase class I aerobic EC 4212; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.756
BF49_3112
Nitrilotriacetate monooxygenase component A.
       0.705
BF49_3113
5carboxymethyl2oxohex3 ene17dioate decarboxylase EC 41168 2hydroxyhepta24diene17dioate isomerase EC 533.
  
    0.679
uxuA
Mannonate dehydratase EC 4218; Catalyzes the dehydration of D-mannonate.
  
    0.583
BF49_2830
Biotin carboxylase EC 63414.
   
 
 0.524
fumC
Fumarate hydratase class II EC 4212; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
    
 0.455
pckA
Phosphoenolpyruvate carboxykinase ATP EC 41149; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
    
 0.448
BF49_4394
Pyruvate kinase EC 27140; Belongs to the pyruvate kinase family.
     
 0.442
BF49_4909
2oxoglutarate oxidoreductase alpha subunit EC 1273.
     
 0.419
BF49_3110
Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors.
       0.418
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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