BF49_3124 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BF49_3124

Glutamate Aspartate transport system permease protein GltJ TC 3A134. (243 aa)

Predicted Functional Partners:

BF49_3122

0.999

BF49_3125

0.998

BF49_3123

0.987

BF49_1112

0.978

BF49_1115

0.969

BF49_4328

0.956

BF49_7065

0.955

BF49_1114

0.923

BF49_1113

0.908

BF49_7046

0.901

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BF49_1112	BF49_1113	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	0.996
BF49_1112	BF49_1114	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	Glutamate Aspartate transport system permease protein GltK TC 3A134.	0.995
BF49_1112	BF49_1115	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	ABCtype polar amino acid transport system ATPase component.	0.976
BF49_1112	BF49_3122	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	Glutamate Aspartate transport ATPbinding protein GltL TC 3A134.	0.975
BF49_1112	BF49_3123	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	Glutamate Aspartate transport system permease protein GltK TC 3A134.	0.978
BF49_1112	BF49_3124	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	0.978
BF49_1112	BF49_3125	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	0.906
BF49_1112	BF49_4328	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	ABCtype polar amino acid transport system protein ATPbinding protein.	0.760
BF49_1112	BF49_7046	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	FIG00442713 hypothetical protein.	0.850
BF49_1112	BF49_7065	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	ABC transporter ATPbinding protein.	0.754
BF49_1113	BF49_1112	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	0.996
BF49_1113	BF49_1114	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	Glutamate Aspartate transport system permease protein GltK TC 3A134.	0.992
BF49_1113	BF49_1115	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	ABCtype polar amino acid transport system ATPase component.	0.994
BF49_1113	BF49_3122	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	Glutamate Aspartate transport ATPbinding protein GltL TC 3A134.	0.990
BF49_1113	BF49_3123	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	Glutamate Aspartate transport system permease protein GltK TC 3A134.	0.918
BF49_1113	BF49_3124	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	0.908
BF49_1113	BF49_3125	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	Glutamate Aspartate periplasmic binding protein precursor GltI TC 3A134.	0.978
BF49_1113	BF49_4328	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	ABCtype polar amino acid transport system protein ATPbinding protein.	0.953
BF49_1113	BF49_7046	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	FIG00442713 hypothetical protein.	0.902
BF49_1113	BF49_7065	Glutamate Aspartate transport system permease protein GltJ TC 3A134.	ABC transporter ATPbinding protein.	0.953