Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3158Response regulator. (119 aa)    
Predicted Functional Partners:
BF49_2744
Signal transduction histidine kinase.
  
 0.969
BF49_3244
Chemotaxis protein methyltransferase CheR EC 21180.
 
 0.765
BF49_1306
Periplasmic sensor signal transduction histidine kinase.
 
 0.743
BF49_0082
FIG056333 sensor.
 
 
 
 0.734
BF49_1546
Twocomponent sensor histidine kinase PleC.
 
 
 0.726
BF49_3043
FIG00444791 hypothetical protein.
  
     0.678
BF49_2733
Twocomponent cell cycle transcriptional regulator ctrA winged helix family.
  
 
 0.644
BF49_7023
Nitrogen regulation protein NtrB EC 27133.
 
 0.625
BF49_3954
Sensor histidine kinase ChvG EC 273.
 
 
 0.611
BF49_3575
Twocomponent sensor histidine kinase.
 
 0.607
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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