Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3173Outer membrane proteinprotective antigen OMA87. (556 aa)    
Predicted Functional Partners:
BF49_6589
Lipopolysaccharide biosynthesis.
 
   
 0.818
BF49_6591
FIG00440858 hypothetical protein.
 
     0.780
BF49_0177
Flp pilus assembly protein CpaD.
  
     0.751
BF49_4211
Flp pilus assembly protein CpaD.
  
     0.750
BF49_6586
FIG00442552 hypothetical protein.
 
     0.749
BF49_4274
Probable periplasmic protein Cj0610c imported Campylobacter jejuni strain NCTC 11168.
 
     0.745
BF49_6068
FIG00442381 hypothetical protein.
  
     0.734
BF49_1616
Flagellar biosynthesis protein FlhF.
  
     0.732
BF49_5860
FIG00442729 hypothetical protein.
 
     0.729
BF49_2929
Outer surface protein.
  
     0.728
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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