Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_3182Putative membrane protein; Belongs to the NiCoT transporter (TC 2.A.52) family. (351 aa)    
Predicted Functional Partners:
BF49_3183
COGs COG3683.
   
 0.992
BF49_3184
Dipeptidyl carboxypeptidase Dcp EC 34155.
       0.835
BF49_3185
FIG00442097 hypothetical protein.
       0.546
BF49_2731
Flagellar protein FliJ.
  
     0.537
BF49_0631
Putative Zndependent protease.
  
     0.486
BF49_3477
Hypothetical protein.
  
     0.462
BF49_6778
Exopolysacchride production negative regulator ExoR.
  
     0.454
BF49_1587
Mll7655 protein.
  
     0.453
BF49_4006
Signal recognition particle GTPase.
  
   
 0.442
BF49_2226
FIG00441229 hypothetical protein.
  
     0.438
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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