Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3193Highaffnity carbon uptake protein HatHatR. (340 aa)    
Predicted Functional Partners:
BF49_3194
Putative metal chaperone involved in Zn homeostasis GTPase of COG0523 family.
 
   
 0.933
BF49_2158
Probable RuBisCoexpression protein CbbX.
  
 0.878
BF49_4189
Hypothetical protein.
   
 0.875
alaS
AlanyltRNA synthetase EC 6117; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.871
BF49_5969
Bll5679 protein.
    
 0.865
BF49_1165
Adenylate cyclase EC 4611.
   
 0.858
BF49_3165
Adenylate cyclase EC 4611.
   
 0.858
BF49_0605
Hypothetical protein.
   
 0.856
BF49_2073
Acetylspermidine deacetylase EC 35148 Deacetylases including yeast histone deacetylase and acetoin utilization protein.
   
 0.847
BF49_2690
Acetylpolyamine aminohydrolase.
   
 0.847
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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