Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3266FIG00450348 hypothetical protein. (234 aa)    
Predicted Functional Partners:
BF49_3265
1acylsnglycerol3phosphate acyltransferase EC 23151.
 
     0.812
BF49_3267
Cell division protein FtsX.
 
     0.731
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.689
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.686
BF49_6439
ATPGTPbinding site motif A.
  
     0.685
BF49_0218
DNA polymerase III delta subunit EC 2777.
 
     0.679
BF49_1016
Mlr7403 protein.
  
     0.662
BF49_1622
Transcriptional regulator MucR family.
  
     0.622
ftsE
Cell division transporter ATPbinding protein FtsE TC 3A511; Part of the ABC transporter FtsEX involved in cellular division.
 
     0.606
BF49_7037
Hypothetical protein.
  
     0.604
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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