BF49_3267 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BF49_3267

Cell division protein FtsX. (322 aa)

Predicted Functional Partners:

ftsE

0.998

BF49_0425

0.886

BF49_6753

0.792

ftsQ

0.788

BF49_4202

0.787

BF49_5053

0.769

BF49_5047

0.764

BF49_3949

0.756

ftsA

0.737

BF49_3266

0.731

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BF49_0425	BF49_3267	BF49_0425	BF49_3267	Periplasmic septal ring factor with murein hydrolase activity EnvCYibP.	Cell division protein FtsX.	0.886
BF49_0425	BF49_6753	BF49_0425	BF49_6753	Periplasmic septal ring factor with murein hydrolase activity EnvCYibP.	Cell division protein DivIC FtsB stabilizes FtsL against RasP cleavage.	0.452
BF49_0425	ftsE	BF49_0425	BF49_3268	Periplasmic septal ring factor with murein hydrolase activity EnvCYibP.	Cell division transporter ATPbinding protein FtsE TC 3A511; Part of the ABC transporter FtsEX involved in cellular division.	0.851
BF49_3266	BF49_3267	BF49_3266	BF49_3267	FIG00450348 hypothetical protein.	Cell division protein FtsX.	0.731
BF49_3266	BF49_6753	BF49_3266	BF49_6753	FIG00450348 hypothetical protein.	Cell division protein DivIC FtsB stabilizes FtsL against RasP cleavage.	0.584
BF49_3266	ftsE	BF49_3266	BF49_3268	FIG00450348 hypothetical protein.	Cell division transporter ATPbinding protein FtsE TC 3A511; Part of the ABC transporter FtsEX involved in cellular division.	0.606
BF49_3266	ftsQ	BF49_3266	BF49_5059	FIG00450348 hypothetical protein.	Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.	0.686
BF49_3267	BF49_0425	BF49_3267	BF49_0425	Cell division protein FtsX.	Periplasmic septal ring factor with murein hydrolase activity EnvCYibP.	0.886
BF49_3267	BF49_3266	BF49_3267	BF49_3266	Cell division protein FtsX.	FIG00450348 hypothetical protein.	0.731
BF49_3267	BF49_3949	BF49_3267	BF49_3949	Cell division protein FtsX.	Hypothetical protein.	0.756
BF49_3267	BF49_4202	BF49_3267	BF49_4202	Cell division protein FtsX.	NLPP60 family lipoprotein.	0.787
BF49_3267	BF49_5047	BF49_3267	BF49_5047	Cell division protein FtsX.	Cell division protein FtsI Peptidoglycan synthetase EC 241129.	0.764
BF49_3267	BF49_5053	BF49_3267	BF49_5053	Cell division protein FtsX.	Cell division protein FtsW; Belongs to the SEDS family.	0.769
BF49_3267	BF49_6753	BF49_3267	BF49_6753	Cell division protein FtsX.	Cell division protein DivIC FtsB stabilizes FtsL against RasP cleavage.	0.792
BF49_3267	ftsA	BF49_3267	BF49_5060	Cell division protein FtsX.	Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.	0.737
BF49_3267	ftsE	BF49_3267	BF49_3268	Cell division protein FtsX.	Cell division transporter ATPbinding protein FtsE TC 3A511; Part of the ABC transporter FtsEX involved in cellular division.	0.998
BF49_3267	ftsQ	BF49_3267	BF49_5059	Cell division protein FtsX.	Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.	0.788
BF49_3949	BF49_3267	BF49_3949	BF49_3267	Hypothetical protein.	Cell division protein FtsX.	0.756
BF49_3949	BF49_5047	BF49_3949	BF49_5047	Hypothetical protein.	Cell division protein FtsI Peptidoglycan synthetase EC 241129.	0.530
BF49_3949	ftsE	BF49_3949	BF49_3268	Hypothetical protein.	Cell division transporter ATPbinding protein FtsE TC 3A511; Part of the ABC transporter FtsEX involved in cellular division.	0.661