Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3272Methylaccepting chemotaxis protein. (644 aa)    
Predicted Functional Partners:
BF49_3271
Methylaccepting chemotaxis protein.
     0.973
BF49_2331
FIG139612 Possible conserved membrane protein.
  
   
 0.784
BF49_2332
FIG003603 membrane protein putative.
  
    0.778
BF49_2333
FIG003492 Threonine dehydrogenase and related Zndependent dehydrogenases.
  
     0.774
BF49_6439
ATPGTPbinding site motif A.
  
     0.756
BF49_0276
FIG000868 Homolog of E coli HemY protein.
  
  
 0.739
BF49_3622
Phage protein.
   
   0.715
tolB
Tol-Pal system protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.709
rpsL
SSU ribosomal protein S12p S23e; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
  
 
 0.707
BF49_0039
Putative transcriptional regulatory protein.
  
   
 0.696
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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