Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3288FIG00439764 hypothetical protein. (64 aa)    
Predicted Functional Partners:
BF49_3287
ATPCobIalamin adenosyltransferase EC 25117; Belongs to the Cob(I)alamin adenosyltransferase family.
  
    0.825
BF49_6061
FIG00450516 Zincfinger domain protein.
  
     0.751
BF49_4006
Signal recognition particle GTPase.
  
     0.725
BF49_2731
Flagellar protein FliJ.
  
     0.723
BF49_3289
Inner membrane protein YihY formerly thought to be RNase BN.
 
     0.715
BF49_3980
FIG00450046 hypothetical protein.
  
     0.712
BF49_6084
FIG01004998 hypothetical protein.
  
     0.688
BF49_3285
Electron transfer flavoprotein alpha subunit.
       0.677
BF49_3286
Electron transfer flavoprotein beta subunit.
       0.677
BF49_2235
Protein tyrosine phosphatases.
  
     0.676
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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