BF49_3289 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BF49_3289

Inner membrane protein YihY formerly thought to be RNase BN. (297 aa)

Predicted Functional Partners:

BF49_3884

0.626

BF49_3822

0.616

BF49_3288

0.611

BF49_3768

0.608

BF49_6539

0.585

BF49_3820

0.575

BF49_3287

0.551

BF49_4472

0.537

BF49_0113

0.511

BF49_6501

0.483

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BF49_0113	BF49_3288	FIG00442128 hypothetical protein.	FIG00439764 hypothetical protein.	0.642
BF49_0113	BF49_3289	FIG00442128 hypothetical protein.	Inner membrane protein YihY formerly thought to be RNase BN.	0.511
BF49_0113	BF49_4472	FIG00442128 hypothetical protein.	FIG065752 hypothetical protein.	0.745
BF49_0113	BF49_6501	FIG00442128 hypothetical protein.	Possible outer membrane protein possible porin precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.739
BF49_0113	BF49_6539	FIG00442128 hypothetical protein.	FIG00441513 hypothetical protein.	0.763
BF49_3287	BF49_3288	ATPCobIalamin adenosyltransferase EC 25117; Belongs to the Cob(I)alamin adenosyltransferase family.	FIG00439764 hypothetical protein.	0.806
BF49_3287	BF49_3289	ATPCobIalamin adenosyltransferase EC 25117; Belongs to the Cob(I)alamin adenosyltransferase family.	Inner membrane protein YihY formerly thought to be RNase BN.	0.551
BF49_3288	BF49_0113	FIG00439764 hypothetical protein.	FIG00442128 hypothetical protein.	0.642
BF49_3288	BF49_3287	FIG00439764 hypothetical protein.	ATPCobIalamin adenosyltransferase EC 25117; Belongs to the Cob(I)alamin adenosyltransferase family.	0.806
BF49_3288	BF49_3289	FIG00439764 hypothetical protein.	Inner membrane protein YihY formerly thought to be RNase BN.	0.611
BF49_3288	BF49_4472	FIG00439764 hypothetical protein.	FIG065752 hypothetical protein.	0.440
BF49_3288	BF49_6539	FIG00439764 hypothetical protein.	FIG00441513 hypothetical protein.	0.435
BF49_3289	BF49_0113	Inner membrane protein YihY formerly thought to be RNase BN.	FIG00442128 hypothetical protein.	0.511
BF49_3289	BF49_3287	Inner membrane protein YihY formerly thought to be RNase BN.	ATPCobIalamin adenosyltransferase EC 25117; Belongs to the Cob(I)alamin adenosyltransferase family.	0.551
BF49_3289	BF49_3288	Inner membrane protein YihY formerly thought to be RNase BN.	FIG00439764 hypothetical protein.	0.611
BF49_3289	BF49_3768	Inner membrane protein YihY formerly thought to be RNase BN.	Ribonuclease BN EC 31.	0.608
BF49_3289	BF49_3820	Inner membrane protein YihY formerly thought to be RNase BN.	Ribonuclease BN EC 31.	0.575
BF49_3289	BF49_3822	Inner membrane protein YihY formerly thought to be RNase BN.	Ribonuclease BN EC 31.	0.616
BF49_3289	BF49_3884	Inner membrane protein YihY formerly thought to be RNase BN.	Ribonuclease BN EC 31.	0.626
BF49_3289	BF49_4472	Inner membrane protein YihY formerly thought to be RNase BN.	FIG065752 hypothetical protein.	0.537