STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3298Flavincontaining monooxygenase. (591 aa)    
Predicted Functional Partners:
BF49_5213
Hypothetical protein in cluster with At3g50560like gene family.
 
     0.678
BF49_4102
HMPPP hydrolase pyridoxal phosphatase Cof detected in genetic screen for thiamin metabolic genes PMID15292217.
 
 0.596
BF49_1975
Carboxymuconolactone decarboxylase.
 
  
  0.577
BF49_3299
Uncharacterized conserved protein.
       0.551
BF49_0687
Haloacid dehalogenase type II EC 3812.
  
  
 0.537
BF49_1887
Catechol 12dioxygenase EC 113111.
  
    0.501
BF49_4573
Esterase.
  
 
 0.498
BF49_1393
Catechol 12dioxygenase EC 113111.
  
    0.488
atpG
ATP synthase gamma chain EC 36314; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.487
BF49_7260
Catechol 12dioxygenase EC 113111.
  
    0.481
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.