BF49_3299 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BF49_3299

Uncharacterized conserved protein. (325 aa)

Predicted Functional Partners:

BF49_6553

0.722

BF49_1470

0.626

BF49_5338

0.562

BF49_3298

0.551

BF49_3805

0.510

purN

0.452

BF49_0489

0.447

BF49_3957

0.447

BF49_3300

0.437

BF49_4906

0.435

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BF49_0489	BF49_3299	BF49_0489	BF49_3299	Adenylate cyclase EC 4611.	Uncharacterized conserved protein.	0.447
BF49_0489	BF49_3957	BF49_0489	BF49_3957	Adenylate cyclase EC 4611.	Kinesin light chain.	0.452
BF49_0489	BF49_4906	BF49_0489	BF49_4906	Adenylate cyclase EC 4611.	Adenylate cyclase EC 4611.	0.586
BF49_1470	BF49_3299	BF49_1470	BF49_3299	Nitricoxide reductase subunit B EC 17997; Belongs to the heme-copper respiratory oxidase family.	Uncharacterized conserved protein.	0.626
BF49_3298	BF49_3299	BF49_3298	BF49_3299	Flavincontaining monooxygenase.	Uncharacterized conserved protein.	0.551
BF49_3299	BF49_0489	BF49_3299	BF49_0489	Uncharacterized conserved protein.	Adenylate cyclase EC 4611.	0.447
BF49_3299	BF49_1470	BF49_3299	BF49_1470	Uncharacterized conserved protein.	Nitricoxide reductase subunit B EC 17997; Belongs to the heme-copper respiratory oxidase family.	0.626
BF49_3299	BF49_3298	BF49_3299	BF49_3298	Uncharacterized conserved protein.	Flavincontaining monooxygenase.	0.551
BF49_3299	BF49_3300	BF49_3299	BF49_3300	Uncharacterized conserved protein.	HNH endonuclease family protein.	0.437
BF49_3299	BF49_3805	BF49_3299	BF49_3805	Uncharacterized conserved protein.	Cytochrome c551 peroxidase EC 11115.	0.510
BF49_3299	BF49_3957	BF49_3299	BF49_3957	Uncharacterized conserved protein.	Kinesin light chain.	0.447
BF49_3299	BF49_4906	BF49_3299	BF49_4906	Uncharacterized conserved protein.	Adenylate cyclase EC 4611.	0.435
BF49_3299	BF49_5338	BF49_3299	BF49_5338	Uncharacterized conserved protein.	Putative esterase.	0.562
BF49_3299	BF49_6553	BF49_3299	BF49_6553	Uncharacterized conserved protein.	Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.	0.722
BF49_3299	purN	BF49_3299	BF49_0936	Uncharacterized conserved protein.	Phosphoribosylglycinamide formyltransferase EC 2122; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.	0.452
BF49_3300	BF49_3299	BF49_3300	BF49_3299	HNH endonuclease family protein.	Uncharacterized conserved protein.	0.437
BF49_3805	BF49_3299	BF49_3805	BF49_3299	Cytochrome c551 peroxidase EC 11115.	Uncharacterized conserved protein.	0.510
BF49_3957	BF49_0489	BF49_3957	BF49_0489	Kinesin light chain.	Adenylate cyclase EC 4611.	0.452
BF49_3957	BF49_3299	BF49_3957	BF49_3299	Kinesin light chain.	Uncharacterized conserved protein.	0.447
BF49_3957	BF49_4906	BF49_3957	BF49_4906	Kinesin light chain.	Adenylate cyclase EC 4611.	0.572