Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_3312DSBA oxidoreductase. (210 aa)    
Predicted Functional Partners:
BF49_3320
Periplasmic thioldisulfide oxidoreductase DsbB required for DsbA reoxidation.
  
 
 0.772
BF49_3313
LrgAassociated membrane protein LrgB.
       0.568
BF49_3314
Antiholinlike protein LrgA.
       0.568
BF49_4397
FIG00451076 hypothetical protein; Belongs to the UPF0335 family.
  
     0.514
rpoH
RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
 
   
 0.488
atpF
ATP synthase F0 sector subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
 
  
 0.482
BF49_5053
Cell division protein FtsW; Belongs to the SEDS family.
 
  
 0.474
BF49_4268
THIOdisulfide Interchange Protein.
 
   
 0.468
polA
DNA polymerase I EC 2777; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.466
BF49_5156
FIG00443822 hypothetical protein.
  
     0.463
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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