Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3317FIG00441143 hypothetical protein. (163 aa)    
Predicted Functional Partners:
BF49_5783
FIG00440799 hypothetical protein.
  
 
 
 0.720
BF49_3171
Glutamate synthase NADPH large chain EC 14113.
     
 0.710
BF49_5784
Bll5850 protein.
  
  
 0.684
BF49_5794
Bll5850 protein.
  
  
 0.684
BF49_6814
FIG00444127 hypothetical protein.
 
     0.643
BF49_3318
FIG00852701 hypothetical protein.
       0.630
BF49_0958
Cyclolysin secretion ATPbinding protein.
  
 
 0.615
BF49_6700
Peptidase C14 caspase catalytic subunit p20 precursor.
  
    0.604
tal
Transaldolase EC 2212 Glucose6phosphate isomerase EC 5319; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
 
   
 0.558
BF49_0011
FIG00443355 hypothetical protein.
  
     0.535
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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