Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3319Bll1341 hypothetical protein. (361 aa)    
Predicted Functional Partners:
BF49_3318
FIG00852701 hypothetical protein.
       0.540
BF49_3317
FIG00441143 hypothetical protein.
       0.455
BF49_3263
FIG00439845 hypothetical protein.
  
     0.445
BF49_6910
Transporter.
  
     0.437
BF49_6431
FIG00440573 hypothetical protein.
  
     0.429
BF49_6432
Bll5137 protein.
  
     0.425
BF49_5636
Tricarboxylate transport membrane protein TctA.
 
    0.412
BF49_0679
Tricarboxylate transport membrane protein TctA.
 
    0.411
BF49_1613
FIG00445928 hypothetical protein.
  
     0.411
BF49_1641
Tricarboxylate transport membrane protein TctA.
 
    0.410
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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