Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_3320Periplasmic thioldisulfide oxidoreductase DsbB required for DsbA reoxidation. (179 aa)    
Predicted Functional Partners:
BF49_0751
Proteindisulfide isomerase.
 
 
 0.822
BF49_2294
Periplasmic thioldisulfide interchange protein DsbA.
 
 
 0.804
BF49_3312
DSBA oxidoreductase.
  
 
 0.772
recO
DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
   
 0.744
BF49_0766
NADHubiquinone oxidoreductase 172 kD subunit.
 
     0.705
BF49_3350
Bll1313 protein.
  
     0.699
BF49_0201
Transporter.
  
     0.678
BF49_2744
Signal transduction histidine kinase.
  
     0.634
atpF-2
ATP synthase B chain EC 36314; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
   
 0.619
BF49_6575
GcrA cell cycle regulator.
  
     0.582
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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