STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3340Hydroxymethylpyrimidine ABC transporter substratebinding component. (348 aa)    
Predicted Functional Partners:
BF49_3916
Hydroxymethylpyrimidine ABC transporter transmembrane component.
 
 0.787
BF49_1846
Hydroxymethylpyrimidine ABC transporter transmembrane component.
 
 0.768
BF49_0844
Hydroxymethylpyrimidine ABC transporter transmembrane component.
 
 0.750
BF49_3521
ABC transporter permease protein with unknown substrate.
  
 0.750
BF49_7267
Alkanesulfonates transport system permease protein.
  
 0.750
BF49_5915
Cyanate ABC transporter permease protein.
 
 0.697
BF49_1494
Alkanesulfonates transport system permease protein.
  
 0.684
BF49_1880
Cyanate ABC transporter permease protein.
  
 0.658
BF49_1844
Hydroxymethylpyrimidine ABC transporter ATPase component.
 
 0.645
ndvA
Beta12glucan export ATPbindingpermease protein NdvA EC 36342; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
 0.634
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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