Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3360TRAP transporter 4TM12TM fusion protein unknown substrate 1. (703 aa)    
Predicted Functional Partners:
BF49_3361
TRAP transporter solute receptor unknown substrate 1.
 
 
 0.992
BF49_3359
DUF1850 domaincontaining protein.
 
 
  0.979
BF49_2639
TRAP transporter solute receptor TAXI family precursor.
 
 
 0.935
BF49_0314
FIG00444255 hypothetical protein.
 
 
 0.839
BF49_1122
TRAP transporter solute receptor TAXI family precursor unknown substrate 2.
 
 
 0.809
BF49_3893
Immunogenic protein.
  
 
 0.611
BF49_5116
TRAPtype transport system small permease component predicted Nacetylneuraminate transporter.
  
  
 0.592
BF49_6994
TRAP dicarboxylate transporter DctM subunit unknown substrate 5.
  
  
  0.582
BF49_3938
FIG01005113 hypothetical protein.
 
 
 0.574
BF49_4151
TRAP transporter solute receptor unknown substrate 3.
  
  
 0.563
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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