Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3368FIG00443655 hypothetical protein. (437 aa)    
Predicted Functional Partners:
BF49_3367
Oxidoreductase aldoketo reductase family.
       0.753
BF49_6979
Endonucleaseexonucleasephosphatase.
   
    0.583
BF49_4985
Protein C6orf168.
  
    0.552
BF49_1075
35cyclicnucleotide phosphodiesterase EC 31417.
  
     0.421
BF49_3369
Hypothetical protein.
       0.415
BF49_3366
14dihydroxy2naphthoylCoA hydrolase EC 31228 in phylloquinone biosynthesis.
       0.412
BF49_4140
FIG00446465 hypothetical protein.
  
    0.410
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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