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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3374FIG00446009 hypothetical protein. (423 aa)    
Predicted Functional Partners:
BF49_3375
FIG00443876 hypothetical protein.
 
     0.830
BF49_0140
FIG00441701 hypothetical protein.
  
     0.751
BF49_2073
Acetylspermidine deacetylase EC 35148 Deacetylases including yeast histone deacetylase and acetoin utilization protein.
   
 0.734
BF49_2690
Acetylpolyamine aminohydrolase.
   
 0.734
BF49_3376
Conserved hypothetical protein.
       0.727
BF49_1050
COG0553 Superfamily II DNARNA helicases SNF2 family.
  
 
 0.668
BF49_7325
DNA polymerase III beta subunit EC 2777; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initia [...]
   
    0.621
BF49_0441
DEADDEAH box helicaselike protein.
    
 0.596
BF49_1690
Phytoene synthase EC 25132.
   
 
 0.537
BF49_1691
Phytoene synthase EC 25132.
   
 
 0.537
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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