STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3380Putative transcriptional activator ChrR. (215 aa)    
Predicted Functional Partners:
BF49_3379
RNA polymerase sigma70 factor ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.976
BF49_3381
RNA polymerase sigma70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.883
BF49_3386
COG2907 Amine oxidase flavincontaining.
 
  
 0.852
BF49_3387
Hypothetical protein COG3496.
 
  
 0.727
BF49_2730
RNA polymerase sigma70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.725
BF49_1650
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.706
BF49_2229
RNA polymerase sigmaH factor AlgT; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.667
BF49_1654
ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.662
BF49_1039
RNA polymerase ECFtype sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.602
BF49_4744
Probable RNA polymerase sigma subunit; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.602
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.