Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3393FIG01005162 hypothetical protein; Belongs to the UPF0262 family. (165 aa)    
Predicted Functional Partners:
BF49_3392
Arsenate reductase EC 12041; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
     0.984
hisD
Histidinol dehydrogenase EC 11123; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
       0.853
BF49_3395
FIG00450379 hypothetical protein.
 
     0.708
BF49_5918
FIG040666 hypothetical protein perhaps implicated in de Novo purine biosynthesis.
  
     0.679
BF49_0766
NADHubiquinone oxidoreductase 172 kD subunit.
  
   
 0.666
BF49_6982
FIG040666 hypothetical protein perhaps implicated in de Novo purine biosynthesis.
  
     0.664
BF49_6464
ZINCFINGER PROTEIN.
 
   
 0.651
BF49_0606
Aerobic cobaltochelatase CobT subunit EC 6612.
  
     0.647
BF49_4297
Thiaminphosphate pyrophosphorylase EC 2513.
  
     0.633
BF49_3391
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.612
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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