Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3399Nonheme chloroperoxidase EC 111110. (274 aa)    
Predicted Functional Partners:
BF49_6971
Hypothetical protein.
  
 0.821
BF49_3400
Hypothetical protein.
       0.723
BF49_2686
Osuccinylbenzoic acidCoA ligase EC 62126.
  
 0.673
BF49_6553
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 0.656
BF49_6759
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.590
BF49_5253
Betaketoadipate enollactone hydrolase EC 31124.
  
     0.483
BF49_0406
2oxoglutarate dehydrogenase E1 component EC 1242.
   
  0.453
BF49_4342
Opine oxidase subunit A.
   
 0.447
BF49_3402
Thioredoxin reductase EC 1819.
 
  
 0.436
BF49_5550
FIG00443488 hypothetical protein.
  
  
 0.427
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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