Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_3447D2hydroxyglutarate dehydrogenase. (470 aa)    
Predicted Functional Partners:
BF49_3448
Predicted biotin regulatory protein BioR GntR family.
       0.781
BF49_3285
Electron transfer flavoprotein alpha subunit.
 
 
 0.708
BF49_3286
Electron transfer flavoprotein beta subunit.
 
 
 0.675
BF49_2624
Tungstencontaining formate dehydrogenase beta subunit.
   
 0.654
BF49_3073
Glycolate dehydrogenase EC 119914 ironsulfur subunit GlcF.
 
 
 0.623
BF49_3074
Glycolate dehydrogenase EC 119914 FADbinding subunit GlcE.
 
  
 
0.623
BF49_3446
Dihydrodipicolinate synthase family.
  
    0.522
BF49_6732
Glycolate oxidase EC 11315.
 
 0.498
BF49_2933
Llactate dehydrogenase EC 1123.
 
 0.484
BF49_5008
FOG WD40like repeat.
    
   0.471
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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