Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_3496Muconate cycloisomerase EC 5511; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (58 aa)    
Predicted Functional Partners:
BF49_7260
Catechol 12dioxygenase EC 113111.
  
 
 0.804
BF49_1393
Catechol 12dioxygenase EC 113111.
  
 
 0.785
BF49_1887
Catechol 12dioxygenase EC 113111.
  
 
 0.785
BF49_3495
3oxoacylacylcarrier protein reductase EC 111100.
    
 0.624
BF49_3499
Ribokinase EC 27115.
    
 0.532
BF49_3497
HIT1 PROTEIN.
       0.465
BF49_3498
NADH pyrophosphatase EC 36122.
       0.453
BF49_2610
Protocatechuate 34dioxygenase alpha chain EC 113113.
  
 
 0.439
BF49_2611
Protocatechuate 34dioxygenase beta chain EC 113113.
  
 
 0.439
BF49_7258
Protocatechuate 34dioxygenase alpha chain EC 113113.
  
 
 0.439
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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