Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3497HIT1 PROTEIN. (139 aa)    
Predicted Functional Partners:
BF49_3498
NADH pyrophosphatase EC 36122.
       0.840
BF49_3499
Ribokinase EC 27115.
  
   0.731
BF49_0889
Glutamine synthetase type II eukaryotic EC 6312.
  
   0.657
BF49_6608
Glutamine synthetase type I EC 6312.
  
   0.657
slyX
Protein SlyX; Belongs to the SlyX family.
  
    0.639
BF49_3500
Transcriptional regulator AsnC family.
       0.578
BF49_4910
Glutamate synthase NADPH small chain EC 14113.
  
   0.535
BF49_4032
Naproline symporter Sensor histidine kinase PrlS.
 
     0.497
BF49_0244
FIG002473 Protein YcaR in KDO2Lipid A biosynthesis cluster; Belongs to the UPF0434 family.
  
    0.470
BF49_3496
Muconate cycloisomerase EC 5511; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.465
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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