Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3511Probable isomerase. (121 aa)    
Predicted Functional Partners:
BF49_5857
Bll5781 protein.
 
     0.781
BF49_1634
MethylmalonylCoA mutase EC 54992.
    
 0.594
BF49_1637
MethylmalonylCoA mutase EC 54992.
    
 0.594
BF49_5010
Bll6640 hypothetical protein.
  
     0.551
BF49_5476
Cytidinedeoxycytidylate deaminase family protein.
  
 
 0.536
BF49_4910
Glutamate synthase NADPH small chain EC 14113.
  
  
 0.529
BF49_2880
Epoxide hydrolase EC 3329.
  
  
  0.527
BF49_3510
Endoribonuclease LPSP.
  
    0.524
nuoI
NADHubiquinone oxidoreductase chain I EC 1653; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
  
 0.523
BF49_0771
Probable signal peptide protein.
  
  
  0.519
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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