Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3515Hypothetical protein. (282 aa)    
Predicted Functional Partners:
BF49_1855
TRAPtype C4dicarboxylate transport system small permease component.
  
     0.739
BF49_5720
FIG00442610 hypothetical protein.
  
     0.734
BF49_3690
Conserved hypothetical protein putative signal peptide.
  
     0.721
BF49_7086
Hypothetical protein.
  
     0.721
BF49_5037
FIG00442610 hypothetical protein.
  
     0.720
BF49_5185
Miscellaneous hypotheticalpartial homology.
  
     0.716
BF49_0472
Hypothetical protein.
  
     0.715
BF49_0275
FIG006581 hypothetical protein.
  
     0.706
BF49_0448
FIG00442104 hypothetical protein.
  
     0.704
BF49_1623
Basic prolinerich protein precursor.
  
     0.684
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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