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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3521ABC transporter permease protein with unknown substrate. (274 aa)    
Predicted Functional Partners:
BF49_3522
ABC transporter ATPbinding protein.
 
 0.970
BF49_3524
ABC transporter substratebinding protein.
 
 
 0.929
BF49_5026
Taurinebinding periplasmic protein TauA.
 
 
 0.911
BF49_5838
ABC transporter substratebinding protein.
 
 
 0.902
BF49_5329
ABC transporter ATPbinding protein with unknown substrate.
 
 0.881
BF49_5542
Taurine transport ATPbinding protein TauB.
 
 0.881
BF49_5540
Alkanesulfonatesbinding protein.
 
 
 0.880
BF49_1495
ABCtype probable sulfate transporter ATPase component.
 
 0.877
BF49_5836
Taurine transport ATPbinding protein TauB.
 
 0.869
BF49_1844
Hydroxymethylpyrimidine ABC transporter ATPase component.
 
 0.854
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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