Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3561Blr3473 probable sulfate transporter. (569 aa)    
Predicted Functional Partners:
BF49_3560
Protein of unknown function DUF1275.
       0.785
BF49_5589
SerThr protein phosphatase family protein.
  
  0.738
BF49_3171
Glutamate synthase NADPH large chain EC 14113.
 
  
 0.728
BF49_6971
Hypothetical protein.
   
 
 0.693
BF49_4189
Hypothetical protein.
    
 
 0.665
BF49_0892
Protein tyrosine phosphatase EC 31348.
   
 
 0.658
BF49_7342
FIG00444284 hypothetical protein.
  
     0.627
BF49_3559
Putative transport protein.
 
     0.596
BF49_2306
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 
 0.590
BF49_6651
NADHubiquinone oxidoreductase chain M EC 1653.
  
 
 0.535
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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