Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3572FIG01200701 possible membrane protein. (551 aa)    
Predicted Functional Partners:
BF49_3573
Protein of unknown function DUF882.
 
  
 0.973
BF49_5407
Outer membrane receptor proteins mostly Fe transport.
   
 0.738
BF49_0231
Cell division protein FtsK.
   
 
 0.718
BF49_0424
Carboxylterminal protease EC 3421102; Belongs to the peptidase S41A family.
  
 0.674
BF49_6733
Carboxylterminal protease family protein; Belongs to the peptidase S41A family.
  
 0.674
BF49_3574
Hypothetical protein.
       0.671
BF49_3571
ABCtype uncharacterized transport system periplasmic component.
 
     0.618
BF49_4051
Adenylate cyclase EC 4611.
 
  
 0.600
BF49_4047
Adenylate cyclase EC 4611.
 
 
 0.594
BF49_6381
Chemotaxis protein methyltransferase CheR EC 21180.
   
 
 0.565
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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