Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3620Hypothetical protein. (129 aa)    
Predicted Functional Partners:
BF49_3621
Hypothetical protein.
       0.773
BF49_3618
Hypothetical protein.
       0.538
BF49_3619
Bacteriophage tail sheath protein.
       0.538
BF49_3617
Hypothetical protein.
       0.480
BF49_3622
Phage protein.
       0.469
BF49_3623
Phage tailDNA circulation protein.
       0.458
BF49_3624
FIG003269 Prophage tail protein.
       0.441
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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