Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3650Hypothetical protein. (144 aa)    
Predicted Functional Partners:
BF49_0746
Nucleosidediphosphatesugar epimerases.
  
     0.631
BF49_2043
Monooxygenase FADbinding.
  
  
  0.498
BF49_5907
FIG01008584 hypothetical protein.
  
    0.493
BF49_1802
Phenylacetic acid degradation operon negative regulatory protein PaaX.
   
    0.487
BF49_0665
Transcriptional regulator MarR family.
  
    0.468
BF49_0764
Transcriptional regulator containing an amidase domain and an AraCtype DNAbinding HTH domain.
 
    0.468
BF49_0765
ThiJPfpI family protein.
 
    0.462
BF49_3649
Lactoylglutathione lyase EC 4415.
       0.448
BF49_3920
Hypothetical protein.
  
     0.436
BF49_5319
Hypothetical protein.
  
  
 0.436
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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