Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_3706Phydroxylaminobenzoate lyase. (118 aa)    
Predicted Functional Partners:
BF49_6425
Aldoxime dehydratase.
  
     0.741
BF49_1974
Hypothetical protein.
  
     0.632
BF49_6571
OrfZ protein.
  
     0.616
recF
DNA recombination and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
     0.599
BF49_3520
Gentisate 12dioxygenase EC 113114.
  
     0.597
BF49_2671
Hypothetical protein.
  
     0.581
BF49_3707
Oxygeninsensitive NADPH nitroreductase EC 1.
    
  0.550
BF49_3440
Tannase and feruloyl esterase.
  
     0.537
gfa
Glutathionedependent formaldehydeactivating enzyme EC 44122; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family.
  
     0.535
BF49_5366
Glutathionedependent formaldehydeactivating enzyme EC 44122.
  
     0.523
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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