Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3716Bll2791 protein. (288 aa)    
Predicted Functional Partners:
BF49_3715
cAMPbinding proteins catabolite gene activator and regulatory subunit of cAMPdependent protein kinases.
 
     0.597
BF49_4398
Protein of unknown function DUF882.
  
    0.560
BF49_0677
FIG00983575 hypothetical protein.
 
     0.504
BF49_4434
Probable ABC transporter substratebinding protein.
  
    0.504
BF49_5311
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.490
BF49_0676
Putative secreted protein.
 
     0.476
BF49_2288
LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
    0.417
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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